PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000047.1_g00055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 258aa    MW: 29336.8 Da    PI: 8.9288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000047.1_g00055.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.11.9e-4551372128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgk.rknratksgyWk 84 
                               pGfrFhPt+eel+++yL+  v++kk +  ++i  ++iy+++PwdLp k+ ++ +e+ewyfF+ rd+k+  g+ ++nr+t +g+Wk
  Itr_sc000047.1_g00055.1   5 LPGFRFHPTEEELLNFYLRSAVNAKKPRS-DIIGFLNIYQHDPWDLPgKASEGqGEREWYFFVARDRKHGGGNgKANRTTGNGFWK 89 
                              59************************888.99***************5433333677************975439999******** PP

                      NAM  85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atg+d+++ s+    ++++ g+kktLvfy+grap+g++tdWvm+e+rl
  Itr_sc000047.1_g00055.1  90 ATGSDRPIRSNspseGRKVLGMKKTLVFYQGRAPRGRRTDWVMNEFRL 137
                              *********9989888888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-514157IPR003441NAC domain
PROSITE profilePS5100552.7074157IPR003441NAC domain
PfamPF023654.9E-246137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEVQLPGFRF HPTEEELLNF YLRSAVNAKK PRSDIIGFLN IYQHDPWDLP GKASEGQGER  60
EWYFFVARDR KHGGGNGKAN RTTGNGFWKA TGSDRPIRSN SPSEGRKVLG MKKTLVFYQG  120
RAPRGRRTDW VMNEFRLSDN TTCSLKEDVV LCKVYRKATS FKELEQKSLK EEQGYAVAAS  180
PTPASGGYGV HLKDFESTFF HVPTISSDQE SNHDKAQKFS ALYAKHGFVQ QEDALSEEVD  240
SLGNLFQVRD NWSLYAMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-42616317174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952734.13e-79PREDICTED: NAC transcription factor 29
SwissprotQ9ZVH01e-46FEZ_ARATH; Protein FEZ
TrEMBLA0A0B2PNZ12e-78A0A0B2PNZ1_GLYSO; Putative NAC domain-containing protein 94
TrEMBLA0A0R4J4G22e-78A0A0R4J4G2_SOYBN; Uncharacterized protein
TrEMBLC6TLR15e-79C6TLR1_SOYBN; Putative uncharacterized protein (Fragment)
STRINGGLYMA11G10230.15e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-73NAC domain containing protein 36